Cloud Pipeline
Introduction
Release notes
v.0.13
v.0.14
v.0.15
v.0.16
v.0.17
User guide
Contents
1. Quick start
2. Getting started
3. Overview
4. Manage Folder
4.0. Overview
4.1. Create an object in Folder
4.2. Rename Folder
4.3. Delete Folder
4.4. Clone a Folder
4.5. Lock a Folder
5. Manage Metadata
5.0. Overview
5.1. Add/delete Metadata items
5.2. Upload Metadata
5.3. Customize view of the entity instance table
5.4. Launch a Run configuration
5.5. Download data from external resources
6. Manage Pipeline
6.0. Overview
6.1. Create and configure Pipeline
6.1.1. Building WDL Pipeline with graphical PipelineBuilder
6.2. Launch a Pipeline
6.3. Delete and unregister Pipeline
6.4. Work with AWS HealthOmics Workflow
6.5. Pipeline configuration
7. Manage Detached configuration
7.0. Overview
7.1. Create and customize Detached configuration
7.2. Launch Detached configuration
7.3. Expansion expressions
7.4. Remove Detached configuration
8. Manage Data Storage
8.0. Overview
8.1. Create and edit Data Storage
8.2. Upload/Download data
8.3. Create and edit text files
8.4. Control file versions
8.5. Delete and unregister Data Storage
8.6. Delete Files and Folders from Data Storage
8.7. Create shared file system
8.8. Data sharing
8.9. Mapping storages
8.10. Storage lifecycle
8.11. Sensitive storages
8.12. Cloud Data application
8.13. Versioned storages
8.14. Omics storages
9. Manage cluster nodes
9.0. Cluster nodes
9.1. Hot node pools
9.2. Core services monitoring
9.3. Cloud nodes
10. Manage Tools
10.0. Overview
10.1. Add and edit a Docker registry
10.2. Add/edit a Tool group
10.3. Add a Tool
10.4. Edit a Tool
10.5. Launch a Tool
10.6. Tool security check
10.7. Tool version menu
10.8. "Symlinked" tools
10.9. Run capabilities
11. Manage Runs
11.0. Overview
11.1. Manage runs lifecycles
11.2. Auto-commit Docker images
11.3. Sharing with other users
11.4. Automatic labels and actions for the runs
11.5. Archive completed runs
12. Manage settings
12.0. Overview
12.1. Add a new system event
12.2. Edit a system event
12.3. Create a new user
12.4. Edit/delete a user
12.5. Create a group
12.6. Edit a group/role
12.7. Delete a group
12.8. Change a set of roles/groups for a user
12.9. Email notifications
12.10. Manage system-level settings
12.11. Advanced features
12.12. System logs
12.13. System dictionaries
12.14. NAT gateway
12.15. System jobs
13. Permissions
14. CLI interface
14.0. Overview
14.1. Install and setup
14.2. View and manage Attributes
14.3. Manage Data Storage
14.4. View pipeline definitions
14.5. Manage pipeline executions
14.6. View cluster nodes
14.7. View and manage Permissions
14.8. View tools definitions
14.9. User management
14.10. SSH tunnel
15. Interactive services
15.0. Overview
15.1. Starting an interactive application
15.2. Using terminal access
15.3. Expose node filesystem
15.4. Interactive service examples
16. Issues
17. Tagging by attributes
17.0. CP objects tagging by additional attributes
17.1. Faceted filters search using tags
18. Home page
19. Global search
Appendix A. Instance and Docker container lifecycles
Appendix B. Working with a Project
Appendix C. Working with autoscaled cluster runs
Appendix D. Costs management
Appendix E. Pipeline objects concept
Appendix F. Сomparison of using different FS storage types
Cloud Pipeline API
API tutorials
Automation via CLI
Direct HTTP API implementation
JavaScript example
Cloud Pipeline Installation
Prerequisites
General requirements
AWS
Azure
GCP
Deployment
Cloud native
AWS
Terraform
AWS CloudFormation
Management
Environments sync
Change Kubernetes certificates
Support Windows runs
Cloud Pipeline
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Cloud Pipeline Installation »
Prerequisites »
Azure
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